=> Bootstrap dependency digest>=20010302: found digest-20121220 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. => Checksum SHA1 OK for hdf5-1.8.10-patch1.tar.bz2 => Checksum RMD160 OK for hdf5-1.8.10-patch1.tar.bz2 ===> Installing dependencies for hdf5-1.8.10.1 ========================================================================== The supported build options for hdf5 are: szip threads You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.hdf5 (not defined) ========================================================================== => Build dependency libtool-base>=2.2.6bnb3: found libtool-base-2.4.2 ===> Overriding tools for hdf5-1.8.10.1 ===> Extracting for hdf5-1.8.10.1 /bin/cp /scratch/devel/hdf5/work/hdf5-1.8.10-patch1/config/freebsd /scratch/devel/hdf5/work/hdf5-1.8.10-patch1/config/netbsd /bin/cp /scratch/devel/hdf5/work/hdf5-1.8.10-patch1/config/freebsd /scratch/devel/hdf5/work/hdf5-1.8.10-patch1/config/netbsdelf ===> Patching for hdf5-1.8.10.1 => Applying pkgsrc patches for hdf5-1.8.10.1 ===> Creating toolchain wrappers for hdf5-1.8.10.1 ===> Configuring for hdf5-1.8.10.1 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version checking for a BSD-compatible install... /usr/bin/install -c -o pbulkXXX -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... bin/install-sh -c -d checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64--netbsd checking host system type... x86_64--netbsd checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking for config x86_64--netbsd... no checking for config x86_64--netbsd... no checking for config -netbsd... no checking for config -netbsd... no checking for config x86_64-netbsd... no checking for config x86_64-netbsd... no checking for config x86_64-... no checking for config netbsd... found compiler 'gcc' is GNU gcc-4.5.3 checking for config ./config/site-specific/host-pomegranate.tastylime.net... no checking for config ./config/site-specific/host-tastylime.net... no checking for config ./config/site-specific/host-net... no checking for x86_64--netbsd-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... 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checking for srandom... yes checking for strdup... yes checking for symlink... yes checking for system... yes checking for tmpfile... yes checking for vasprintf... yes checking for waitpid... yes checking for vsnprintf... yes checking if vsnprintf returns correct value... yes checking if lone colon can be used as an argument... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for __attribute__ extension... yes checking for __func__ extension... yes checking for __FUNCTION__ extension... yes checking for C99 designated initialization support... yes checking how to print long long... %ld and %lu checking Threads support system scope... no checking for gpfs... suppressed checking for debug flags... none checking whether function stack tracking is enabled... no checking whether metadata trace file code is enabled... no checking for API tracing... no checking for instrumented library... no checking whether to clear file buffers... yes checking whether a memory checking tool will be used... no checking for parallel support files... skipped checking for I/O filters... all (shuffle,fletcher32,nbit,scaleoffset) checking for Default Virtual File Driver definition... yes checking for Direct Virtual File Driver support... yes checking whether exception handling functions is checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if converting denormalized floating-point values is possible... yes checking if converting floating-point values to long long is not working... false checking if the machine has window style path name... no checking if converting from long double to integers is accurate... yes checking if converting from long double to integers works... yes checking if accurately converting from integers to long double... yes checking if accurately converting unsigned long to float values... yes checking if accurately converting unsigned long long to floating-point values... yes checking if accurately roundup converting floating-point to unsigned long long values... yes checking if right maximum converting floating-point to unsigned long long values... yes checking if correctly converting long double to unsigned int values... yes checking if compiling unsigned long long to floating-point typecasts work... yes checking if compiling long long to floating-point typecasts work... yes checking if converting unsigned long long to long double with precision... yes checking if overflows normally converting floating-point to integer values... yes checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if bad code for log2 routine is generated... no checking if high level library is enabled... yes checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v18 checking Whether to perform strict file format checks... no checking Whether to have library information embedded in the executables... yes checking if alignment restrictions are strictly enforced... no checking that generated files are newer than configure... done configure: creating ./config.status configure: creating ./config.lt config.lt: creating libtool rm: libtoolT: No such file or directory config.status: creating src/libhdf5.settings config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating test/testcheck_version.sh config.status: creating test/testerror.sh config.status: creating test/H5srcdir_str.h config.status: creating test/testlibinfo.sh config.status: creating test/testlinks_env.sh config.status: creating testpar/Makefile config.status: creating testpar/testph5.sh config.status: creating perform/Makefile config.status: creating tools/Makefile config.status: creating tools/h5dump/Makefile config.status: creating tools/h5dump/testh5dump.sh config.status: creating tools/h5dump/testh5dumppbits.sh config.status: creating tools/h5dump/testh5dumpxml.sh config.status: creating tools/h5ls/testh5ls.sh config.status: creating tools/h5import/Makefile config.status: creating tools/h5import/h5importtestutil.sh config.status: creating tools/h5diff/Makefile config.status: creating tools/h5diff/testh5diff.sh config.status: creating tools/h5diff/testph5diff.sh config.status: creating tools/h5jam/Makefile config.status: creating tools/h5jam/testh5jam.sh config.status: creating tools/h5repack/Makefile config.status: creating tools/h5repack/h5repack.sh config.status: creating tools/h5ls/Makefile config.status: creating tools/h5copy/Makefile config.status: creating tools/h5copy/testh5copy.sh config.status: creating tools/lib/Makefile config.status: creating tools/misc/Makefile config.status: creating tools/misc/h5cc config.status: creating tools/misc/testh5mkgrp.sh config.status: creating tools/misc/testh5repart.sh config.status: creating tools/h5stat/testh5stat.sh config.status: creating tools/h5stat/Makefile config.status: creating examples/Makefile config.status: creating examples/run-c-ex.sh config.status: creating examples/testh5cc.sh config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating c++/test/Makefile config.status: creating c++/test/H5srcdir_str.h config.status: creating c++/examples/Makefile config.status: creating c++/examples/run-c++-ex.sh config.status: creating c++/examples/testh5c++.sh config.status: creating fortran/Makefile config.status: creating fortran/src/h5fc config.status: creating fortran/src/Makefile config.status: creating fortran/test/Makefile config.status: creating fortran/testpar/Makefile config.status: creating fortran/examples/Makefile config.status: creating fortran/examples/run-fortran-ex.sh config.status: creating fortran/examples/testh5fc.sh config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/test/Makefile config.status: creating hl/test/H5srcdir_str.h config.status: creating hl/tools/Makefile config.status: creating hl/tools/gif2h5/Makefile config.status: creating hl/tools/gif2h5/h52giftest.sh config.status: creating hl/examples/Makefile config.status: creating hl/examples/run-hlc-ex.sh config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating hl/c++/test/Makefile config.status: creating hl/c++/examples/Makefile config.status: creating hl/c++/examples/run-hlc++-ex.sh config.status: creating hl/fortran/Makefile config.status: creating hl/fortran/src/Makefile config.status: creating hl/fortran/test/Makefile config.status: creating hl/fortran/examples/Makefile config.status: creating hl/fortran/examples/run-hlfortran-ex.sh config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands rm: libtoolT: No such file or directory SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.8.10-patch1 Configured on: Sun Apr 14 01:54:37 UTC 2013 Configured by: pbulkXXX@pomegranate.tastylime.net Configure mode: production Host system: x86_64--netbsd Uname information: NetBSD pomegranate.tastylime.net 6.0 NetBSD 6.0 (GENERIC) #1: Wed Oct 10 10:38:31 PDT 2012 riz@releng.lan:/home/riz/amd64/obj/sys/arch/amd64/compile/GENERIC amd64 Byte sex: little-endian Libraries: Installation point: /usr/pkg Compiling Options: ------------------ Compilation Mode: production C Compiler: /scratch/devel/hdf5/work/.wrapper/bin/gcc CFLAGS: -O2 -I/usr/include H5_CFLAGS: -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wformat=2 -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations -Wc++-compat -Wstrict-overflow -Wlogical-op -Wlarger-than=2048 -Wvla -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wstrict-aliasing -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants -O3 -fomit-frame-pointer -finline-functions AM_CFLAGS: CPPFLAGS: -I/usr/include H5_CPPFLAGS: -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: Shared C Library: yes Static C Library: yes Statically Linked Executables: no LDFLAGS: -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lz -lm Archiver: ar Ranlib: ranlib Debugged Packages: API Tracing: no Languages: ---------- Fortran: no C++: no Features: --------- Parallel HDF5: no High Level library: yes Threadsafety: no Default API Mapping: v18 With Deprecated Public Symbols: yes I/O filters (external): deflate(zlib) I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset MPE: no Direct VFD: yes dmalloc: no Clear file buffers before write: yes Using memory checker: no Function Stack Tracing: no GPFS: no Strict File Format Checks: no Optimization Instrumentation: no Large File Support (LFS): yes => Modifying libtool scripts to use pkgsrc libtool WARNING: *** Please consider adding c++ to USE_LANGUAGES in the package Makefile. WARNING: *** Please consider adding fortran to USE_LANGUAGES in the package Makefile.