=> Bootstrap dependency digest>=20010302: found digest-20121220
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
=> Checksum SHA1 OK for xylem.1.8.7.tar.Z
=> Checksum RMD160 OK for xylem.1.8.7.tar.Z
===> Installing dependencies for xylem-1.8.7
===> Overriding tools for xylem-1.8.7
===> Extracting for xylem-1.8.7
===> Patching for xylem-1.8.7
=> Applying pkgsrc patches for xylem-1.8.7
===> Creating toolchain wrappers for xylem-1.8.7
===> Configuring for xylem-1.8.7
/bin/cp /scratch/biology/xylem/work/xylem/src.c/p2c.h.standard /scratch/biology/xylem/work/xylem/src.c/p2c.h