=> Bootstrap dependency digest>=20010302: found digest-20160304 WARNING: [license.mk] Every package should define a LICENSE. ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. => Checksum SHA1 OK for mpich-3.2.tar.gz => Checksum RMD160 OK for mpich-3.2.tar.gz => Checksum SHA512 OK for mpich-3.2.tar.gz ===> Installing dependencies for mpich-3.2nb1 ========================================================================== The supported build options for mpich are: debug f90 You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.mpich (not defined) ========================================================================== => Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.6nb1 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency x11-links>=1.12: found x11-links-1.12 => Build dependency cwrappers>=20150314: found cwrappers-20180325 => Full dependency bash-[0-9]*: found bash-4.4.019 => Full dependency perl>=5.0: found perl-5.28.0nb1 => Full dependency hwloc>=1.4: found hwloc-1.11.10 => Full dependency openpa>=1.0.1: found openpa-1.0.4 ===> Overriding tools for mpich-3.2nb1 ===> Extracting for mpich-3.2nb1 ===> Patching for mpich-3.2nb1 => Applying pkgsrc patches for mpich-3.2nb1 => Verifying /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-Makefile.in => Applying pkgsrc patch /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-Makefile.in Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-Makefile.in,v 1.3 2017/04/29 18:18:52 adam Exp $ | |Link mpiexec.gforker also against mpllib. |Do not create libopa symlink; it conflicts with parallel/openpa/PLIST. | |--- Makefile.in.orig 2015-11-12 04:08:10.000000000 +0000 |+++ Makefile.in -------------------------- Patching file Makefile.in using Plan A... Hunk #1 succeeded at 10242. Hunk #2 succeeded at 39784. done => Verifying /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-configure => Applying pkgsrc patch /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-configure,v 1.2 2017/04/29 18:18:52 adam Exp $ | |Portability fix. |Make it use weak symbols with Clang. | |--- configure.orig 2015-11-12 04:08:11.000000000 +0000 |+++ configure -------------------------- Patching file configure using Plan A... Hunk #1 succeeded at 26437. Hunk #2 succeeded at 29322. done => Verifying /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpi_romio_configure => Applying pkgsrc patch /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpi_romio_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpi_romio_configure,v 1.1 2017/04/29 18:18:52 adam Exp $ | |Portability fix. | |--- src/mpi/romio/configure.orig 2017-04-28 20:33:04.000000000 +0000 |+++ src/mpi/romio/configure -------------------------- Patching file src/mpi/romio/configure using Plan A... Hunk #1 succeeded at 22929. done => Verifying /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h => Applying pkgsrc patch /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h,v 1.2 2017/04/29 18:18:52 adam Exp $ | |Use pthread_mutexattr_setpshared() only when available. | |--- src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h.orig 2015-11-10 02:39:01.000000000 +0000 |+++ src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h -------------------------- Patching file src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h using Plan A... Hunk #1 succeeded at 106. Hunk #2 succeeded at 125. done => Verifying /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c => Applying pkgsrc patch /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c,v 1.1 2017/04/29 18:18:52 adam Exp $ | |Use pthread_mutexattr_setpshared() only when available. | |--- src/mpid/ch3/channels/nemesis/src/ch3_init.c.orig 2017-04-29 16:30:18.534262462 +0000 |+++ src/mpid/ch3/channels/nemesis/src/ch3_init.c -------------------------- Patching file src/mpid/ch3/channels/nemesis/src/ch3_init.c using Plan A... Hunk #1 succeeded at 52. Hunk #2 succeeded at 64. done => Verifying /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-src_pm_hydra_configure => Applying pkgsrc patch /bulk-data/pkgsrc/parallel/mpi-ch/patches/patch-src_pm_hydra_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_pm_hydra_configure,v 1.3 2017/04/29 18:18:52 adam Exp $ | |Last newline is not needed. | |--- src/pm/hydra/configure.orig 2012-12-20 21:28:12.000000000 +0100 |+++ src/pm/hydra/configure 2013-01-24 15:36:08.260189221 +0100 -------------------------- Patching file src/pm/hydra/configure using Plan A... Hunk #1 succeeded at 14572 (offset 199 lines). done ===> Creating toolchain wrappers for mpich-3.2nb1 ===> Configuring for mpich-3.2nb1 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files Configuring MPICH version 3.2 with '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-fortran=no' '--x-includes=/usr/X11R7/include' '--x-libraries=/usr/X11R7/lib' '--prefix=/usr/pkg' '--build=armv7--netbsdelf-eabihf' '--host=armv7--netbsdelf-eabihf' '--mandir=/usr/pkg/man' 'build_alias=armv7--netbsdelf-eabihf' 'host_alias=armv7--netbsdelf-eabihf' 'CC=gcc' 'CFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/X11R7/include -I/usr/include' 'CXX=c++' 'CXXFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include' 'FC=g77' 'F77=g77' 'FFLAGS=-O' Running on system: NetBSD jetson1.lan 8.0 NetBSD 8.99.25 (TEGRA) #1: Tue Sep 25 11:23:21 PDT 2018 riz@cassava.tastylime.net:/home/riz/obj/sys/arch/evbarm/compile/TEGRA evbarm checking for armv7--netbsdelf-eabihf-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... confdb/install-sh -c -d checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for style of include used by make... 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(cached) yes configure: ===== configuring src/mpi/romio ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-fortran=no' '--x-includes=/usr/X11R7/include' '--x-libraries=/usr/X11R7/lib' '--build=armv7--netbsdelf-eabihf' '--host=armv7--netbsdelf-eabihf' '--mandir=/usr/pkg/man' 'build_alias=armv7--netbsdelf-eabihf' 'host_alias=armv7--netbsdelf-eabihf' 'CC=gcc' 'CFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -O2' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=-lpthread ' 'CPPFLAGS=-I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -I/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpl/include -I/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpl/include -I/usr/pkg/include -D_REENTRANT -I/scratch/parallel/mpi-ch/work/mpich-3.2/src/mpi/romio/include' 'CXX=c++' 'CXXFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -O2' 'FC=g77' 'F77=g77' 'FFLAGS=-O ' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by make... GNU checking for armv7--netbsdelf-eabihf-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for armv7--netbsdelf-eabihf-ar... ar checking the archiver (ar) interface... ar checking build system type... Invalid configuration `armv7--netbsdelf-eabihf': machine `armv7--netbsdelf' not recognized configure: error: /bin/sh confdb/config.sub armv7--netbsdelf-eabihf failed configure: error: src/mpi/romio configure failed *** Error code 1 Stop. make[1]: stopped in /bulk-data/pkgsrc/parallel/mpi-ch WARNING: *** Please consider adding fortran to USE_LANGUAGES in the package Makefile. *** Error code 1 Stop. make: stopped in /bulk-data/pkgsrc/parallel/mpi-ch