=> Bootstrap dependency digest>=20010302: found digest-20160304 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. ===> Building for openbabel-2.3.2nb6 Scanning dependencies of target inchi [ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o Scanning dependencies of target openbabel [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/alias.o In file included from /scratch/biology/openbabel/work/openbabel-2.3.2/include/openbabel/alias.h:19:0, from /scratch/biology/openbabel/work/openbabel-2.3.2/src/alias.cpp:17: /scratch/biology/openbabel/work/openbabel-2.3.2/include/openbabel/shared_ptr.h:33:17: error: 'std::tr1' has not been declared using std::tr1::shared_ptr; ^ In file included from /scratch/biology/openbabel/work/openbabel-2.3.2/src/alias.cpp:17:0: /scratch/biology/openbabel/work/openbabel-2.3.2/include/openbabel/alias.h:118:47: error: 'shared_ptr' was not declared in this scope typedef std::vector< std::pair > > SmartsTable; ^ /scratch/biology/openbabel/work/openbabel-2.3.2/include/openbabel/alias.h:118:73: error: template argument 2 is invalid typedef std::vector< std::pair > > SmartsTable; ^ /scratch/biology/openbabel/work/openbabel-2.3.2/include/openbabel/alias.h:118:75: error: template argument 1 is invalid typedef std::vector< std::pair > > SmartsTable; ^ /scratch/biology/openbabel/work/openbabel-2.3.2/include/openbabel/alias.h:118:75: error: template argument 2 is invalid /scratch/biology/openbabel/work/openbabel-2.3.2/include/openbabel/alias.h:118:77: error: expected unqualified-id before '>' token typedef std::vector< std::pair > > SmartsTable; ^ /scratch/biology/openbabel/work/openbabel-2.3.2/include/openbabel/alias.h:119:24: error: 'SmartsTable' has not been declared static bool LoadFile(SmartsTable& smtable); ^ /scratch/biology/openbabel/work/openbabel-2.3.2/src/alias.cpp:239:26: error: 'bool OpenBabel::AliasData::LoadFile' is not a static data member of 'class OpenBabel::AliasData' bool AliasData::LoadFile(SmartsTable& smtable) ^ /scratch/biology/openbabel/work/openbabel-2.3.2/src/alias.cpp:239:26: error: 'SmartsTable' was not declared in this scope /scratch/biology/openbabel/work/openbabel-2.3.2/src/alias.cpp:239:39: error: 'smtable' was not declared in this scope bool AliasData::LoadFile(SmartsTable& smtable) ^ /scratch/biology/openbabel/work/openbabel-2.3.2/src/alias.cpp:240:1: error: expected ',' or ';' before '{' token { ^ /scratch/biology/openbabel/work/openbabel-2.3.2/src/alias.cpp:396:1: error: expected '}' at end of input }//namespace ^ --- src/CMakeFiles/openbabel.dir/alias.o --- *** [src/CMakeFiles/openbabel.dir/alias.o] Error code 1 make[2]: stopped in /scratch/biology/openbabel/work/openbabel-2.3.2 1 error make[2]: stopped in /scratch/biology/openbabel/work/openbabel-2.3.2 --- src/CMakeFiles/openbabel.dir/all --- *** [src/CMakeFiles/openbabel.dir/all] Error code 2 make[1]: stopped in /scratch/biology/openbabel/work/openbabel-2.3.2 A failure has been detected in another branch of the parallel make make[2]: stopped in /scratch/biology/openbabel/work/openbabel-2.3.2 --- src/formats/libinchi/CMakeFiles/inchi.dir/all --- *** [src/formats/libinchi/CMakeFiles/inchi.dir/all] Error code 2 make[1]: stopped in /scratch/biology/openbabel/work/openbabel-2.3.2 2 errors make[1]: stopped in /scratch/biology/openbabel/work/openbabel-2.3.2 *** [all] Error code 2 make: stopped in /scratch/biology/openbabel/work/openbabel-2.3.2 1 error make: stopped in /scratch/biology/openbabel/work/openbabel-2.3.2 *** Error code 2 Stop. make[1]: stopped in /bulk-data/pkgsrc/biology/openbabel *** Error code 1 Stop. make: stopped in /bulk-data/pkgsrc/biology/openbabel